RND1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RND1

Rho family GTPase 1. (162 aa)

Predicted Functional Partners:

ITSN2

0.998

PLXNB1

0.997

PLXNA2

0.986

PLXNA1

0.968

PLXNB3

0.967

PLXNA4

0.959

ITSN1

0.955

ENSCAPP00000013032

0.955

ENSCAPP00000004294

0.938

PLXNA3

0.921

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000004294	PLXNA2	ENSCAPP00000004294	ENSCAPP00000012181	annotation not available	Plexin A2.	0.438
ENSCAPP00000004294	PLXNA4	ENSCAPP00000004294	ENSCAPP00000002801	annotation not available	Plexin A4.	0.438
ENSCAPP00000004294	PLXNB1	ENSCAPP00000004294	ENSCAPP00000015726	annotation not available	Plexin B1.	0.809
ENSCAPP00000004294	PLXNB3	ENSCAPP00000004294	ENSCAPP00000016981	annotation not available	Plexin B3.	0.807
ENSCAPP00000004294	RND1	ENSCAPP00000004294	ENSCAPP00000002218	annotation not available	Rho family GTPase 1.	0.938
ENSCAPP00000013032	ITSN1	ENSCAPP00000013032	ENSCAPP00000009838	annotation not available	Intersectin 1.	0.947
ENSCAPP00000013032	ITSN2	ENSCAPP00000013032	ENSCAPP00000009309	annotation not available	Intersectin 2.	0.984
ENSCAPP00000013032	RND1	ENSCAPP00000013032	ENSCAPP00000002218	annotation not available	Rho family GTPase 1.	0.955
ITSN1	ENSCAPP00000013032	ENSCAPP00000009838	ENSCAPP00000013032	Intersectin 1.	annotation not available	0.947
ITSN1	ITSN2	ENSCAPP00000009838	ENSCAPP00000009309	Intersectin 1.	Intersectin 2.	0.985
ITSN1	RND1	ENSCAPP00000009838	ENSCAPP00000002218	Intersectin 1.	Rho family GTPase 1.	0.955
ITSN2	ENSCAPP00000013032	ENSCAPP00000009309	ENSCAPP00000013032	Intersectin 2.	annotation not available	0.984
ITSN2	ITSN1	ENSCAPP00000009309	ENSCAPP00000009838	Intersectin 2.	Intersectin 1.	0.985
ITSN2	RND1	ENSCAPP00000009309	ENSCAPP00000002218	Intersectin 2.	Rho family GTPase 1.	0.998
PLXNA1	PLXNA2	ENSCAPP00000015939	ENSCAPP00000012181	Plexin A1.	Plexin A2.	0.912
PLXNA1	PLXNA4	ENSCAPP00000015939	ENSCAPP00000002801	Plexin A1.	Plexin A4.	0.957
PLXNA1	PLXNB1	ENSCAPP00000015939	ENSCAPP00000015726	Plexin A1.	Plexin B1.	0.410
PLXNA1	RND1	ENSCAPP00000015939	ENSCAPP00000002218	Plexin A1.	Rho family GTPase 1.	0.968
PLXNA2	ENSCAPP00000004294	ENSCAPP00000012181	ENSCAPP00000004294	Plexin A2.	annotation not available	0.438
PLXNA2	PLXNA1	ENSCAPP00000012181	ENSCAPP00000015939	Plexin A2.	Plexin A1.	0.912