CDH20 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CDH20

Cadherin 20. (614 aa)

Predicted Functional Partners:

CDH18

0.963

CDH13

0.960

CDH9

0.958

CDH2

0.958

CTNNB1

0.958

JUP

0.957

CDH12

0.950

CTNND1

0.950

CDH17

0.949

ENSCAPP00000012377

0.949

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH12	CDH13	ENSCAPP00000006415	ENSCAPP00000011536	Cadherin 12.	Cadherin 13.	0.948
CDH12	CDH17	ENSCAPP00000006415	ENSCAPP00000010286	Cadherin 12.	Cadherin 17.	0.950
CDH12	CDH18	ENSCAPP00000006415	ENSCAPP00000013844	Cadherin 12.	Cadherin 18.	0.950
CDH12	CDH2	ENSCAPP00000006415	ENSCAPP00000010254	Cadherin 12.	Cadherin 2.	0.957
CDH12	CDH20	ENSCAPP00000006415	ENSCAPP00000002252	Cadherin 12.	Cadherin 20.	0.950
CDH12	CDH9	ENSCAPP00000006415	ENSCAPP00000000253	Cadherin 12.	Cadherin 9.	0.950
CDH12	CTNNB1	ENSCAPP00000006415	ENSCAPP00000013273	Cadherin 12.	Catenin beta 1.	0.989
CDH12	CTNND1	ENSCAPP00000006415	ENSCAPP00000008768	Cadherin 12.	Catenin delta 1.	0.965
CDH12	ENSCAPP00000012377	ENSCAPP00000006415	ENSCAPP00000012377	Cadherin 12.	annotation not available	0.947
CDH12	JUP	ENSCAPP00000006415	ENSCAPP00000000441	Cadherin 12.	Junction plakoglobin.	0.969
CDH13	CDH12	ENSCAPP00000011536	ENSCAPP00000006415	Cadherin 13.	Cadherin 12.	0.948
CDH13	CDH17	ENSCAPP00000011536	ENSCAPP00000010286	Cadherin 13.	Cadherin 17.	0.961
CDH13	CDH18	ENSCAPP00000011536	ENSCAPP00000013844	Cadherin 13.	Cadherin 18.	0.964
CDH13	CDH2	ENSCAPP00000011536	ENSCAPP00000010254	Cadherin 13.	Cadherin 2.	0.991
CDH13	CDH20	ENSCAPP00000011536	ENSCAPP00000002252	Cadherin 13.	Cadherin 20.	0.960
CDH13	CDH9	ENSCAPP00000011536	ENSCAPP00000000253	Cadherin 13.	Cadherin 9.	0.959
CDH13	CTNNB1	ENSCAPP00000011536	ENSCAPP00000013273	Cadherin 13.	Catenin beta 1.	0.958
CDH13	CTNND1	ENSCAPP00000011536	ENSCAPP00000008768	Cadherin 13.	Catenin delta 1.	0.949
CDH13	ENSCAPP00000012377	ENSCAPP00000011536	ENSCAPP00000012377	Cadherin 13.	annotation not available	0.948
CDH13	JUP	ENSCAPP00000011536	ENSCAPP00000000441	Cadherin 13.	Junction plakoglobin.	0.940