STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH3alkB homolog 3, alpha-ketoglutaratedependent dioxygenase. (286 aa)    
Predicted Functional Partners:
ASCC3
Activating signal cointegrator 1 complex subunit 3.
    
 0.980
ENSCAPP00000010752
annotation not available
    
 0.974
ASCC1
Activating signal cointegrator 1 complex subunit 1.
    
 0.971
TRIP4
Thyroid hormone receptor interactor 4.
    
 
 0.959
KDM6B
Lysine demethylase 6B.
   
 0.930
ALKBH1
alkB homolog 1, histone H2A dioxygenase.
      
 0.925
ENSCAPP00000001550
annotation not available
   
 0.896
GLYR1
Glyoxylate reductase 1 homolog.
    
 
 0.880
ENSCAPP00000000270
annotation not available
   
 0.865
ENSCAPP00000006586
annotation not available
   
 0.865
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.