STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH3alkB homolog 3, alpha-ketoglutaratedependent dioxygenase. (286 aa)    
Predicted Functional Partners:
KDM6B
Lysine demethylase 6B.
   
 0.979
ENSCAPP00000001550
annotation not available
   
 0.923
H2AZ2
H2A.Z variant histone 2.
   
 0.898
ENSCAPP00000000270
annotation not available
    
 0.891
ENSCAPP00000006586
annotation not available
    
 0.891
ENSCAPP00000013350
annotation not available
    
 0.891
MACROH2A2
macroH2A.2 histone.
   
 0.888
MACROH2A1
macroH2A.1 histone.
   
 0.888
GLYR1
Glyoxylate reductase 1 homolog.
    
 
 0.887
SETD2
SET domain containing 2, histone lysine methyltransferase.
    
 0.877
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.