ENSCAPP00000002257 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

ENSCAPP00000002257

annotation not available (126 aa)

Predicted Functional Partners:

SSRP1

0.997

MCM2

0.996

SUPT16H

0.986

MCM6

0.985

ENSCAPP00000010914

0.974

MCM9

0.968

ENSCAPP00000009470

0.967

ASF1B

0.959

ENSCAPP00000002903

0.955

ENSCAPP00000013166

0.953

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASF1B	ENSCAPP00000002257	ENSCAPP00000004210	ENSCAPP00000002257	Anti-silencing function 1B histone chaperone.	annotation not available	0.959
ASF1B	ENSCAPP00000002903	ENSCAPP00000004210	ENSCAPP00000002903	Anti-silencing function 1B histone chaperone.	annotation not available	0.684
ASF1B	ENSCAPP00000009470	ENSCAPP00000004210	ENSCAPP00000009470	Anti-silencing function 1B histone chaperone.	annotation not available	0.853
ASF1B	ENSCAPP00000013166	ENSCAPP00000004210	ENSCAPP00000013166	Anti-silencing function 1B histone chaperone.	annotation not available	0.905
ASF1B	MCM2	ENSCAPP00000004210	ENSCAPP00000003876	Anti-silencing function 1B histone chaperone.	Minichromosome maintenance complex component 2.	0.976
ASF1B	MCM6	ENSCAPP00000004210	ENSCAPP00000000980	Anti-silencing function 1B histone chaperone.	Minichromosome maintenance complex component 6.	0.974
ASF1B	MCM9	ENSCAPP00000004210	ENSCAPP00000016798	Anti-silencing function 1B histone chaperone.	Minichromosome maintenance 9 homologous recombination repair factor.	0.729
ASF1B	SSRP1	ENSCAPP00000004210	ENSCAPP00000002538	Anti-silencing function 1B histone chaperone.	Structure specific recognition protein 1.	0.496
ASF1B	SUPT16H	ENSCAPP00000004210	ENSCAPP00000010595	Anti-silencing function 1B histone chaperone.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.738
ENSCAPP00000002257	ASF1B	ENSCAPP00000002257	ENSCAPP00000004210	annotation not available	Anti-silencing function 1B histone chaperone.	0.959
ENSCAPP00000002257	ENSCAPP00000002903	ENSCAPP00000002257	ENSCAPP00000002903	annotation not available	annotation not available	0.955
ENSCAPP00000002257	ENSCAPP00000009470	ENSCAPP00000002257	ENSCAPP00000009470	annotation not available	annotation not available	0.967
ENSCAPP00000002257	ENSCAPP00000010914	ENSCAPP00000002257	ENSCAPP00000010914	annotation not available	annotation not available	0.974
ENSCAPP00000002257	ENSCAPP00000013166	ENSCAPP00000002257	ENSCAPP00000013166	annotation not available	annotation not available	0.953
ENSCAPP00000002257	MCM2	ENSCAPP00000002257	ENSCAPP00000003876	annotation not available	Minichromosome maintenance complex component 2.	0.996
ENSCAPP00000002257	MCM6	ENSCAPP00000002257	ENSCAPP00000000980	annotation not available	Minichromosome maintenance complex component 6.	0.985
ENSCAPP00000002257	MCM9	ENSCAPP00000002257	ENSCAPP00000016798	annotation not available	Minichromosome maintenance 9 homologous recombination repair factor.	0.968
ENSCAPP00000002257	SSRP1	ENSCAPP00000002257	ENSCAPP00000002538	annotation not available	Structure specific recognition protein 1.	0.997
ENSCAPP00000002257	SUPT16H	ENSCAPP00000002257	ENSCAPP00000010595	annotation not available	SPT16 homolog, facilitates chromatin remodeling subunit.	0.986
ENSCAPP00000002903	ASF1B	ENSCAPP00000002903	ENSCAPP00000004210	annotation not available	Anti-silencing function 1B histone chaperone.	0.684