STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NOCTNocturnin. (413 aa)    
Predicted Functional Partners:
CNOT3
CCR4-NOT transcription complex subunit 3.
    
 0.955
ENSCAPP00000009291
annotation not available
    
 0.955
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.955
CNOT4
CCR4-NOT transcription complex subunit 4.
    
 0.953
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.940
CDC73
Cell division cycle 73.
   
 0.925
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
  0.924
DDX6
DEAD-box helicase 6.
   
 0.924
ENSCAPP00000005818
annotation not available
    
 
 0.889
CNOT8
CCR4-NOT transcription complex subunit 8.
   
 0.888
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.