TRMT10B protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

TRMT10B

tRNA methyltransferase 10B. (281 aa)

Predicted Functional Partners:

TIMM10

0.989

TIMM22

0.987

ENSCAPP00000012831

0.968

ENSCAPP00000011166

0.963

MRPS5

0.963

MRPS25

0.962

MRPS18B

0.961

MRPS2

0.960

ENSCAPP00000003097

0.959

ENSCAPP00000004389

0.959

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000003097	ENSCAPP00000004389	ENSCAPP00000003097	ENSCAPP00000004389	annotation not available	annotation not available	0.998
ENSCAPP00000003097	ENSCAPP00000011166	ENSCAPP00000003097	ENSCAPP00000011166	annotation not available	annotation not available	0.996
ENSCAPP00000003097	ENSCAPP00000012831	ENSCAPP00000003097	ENSCAPP00000012831	annotation not available	annotation not available	0.997
ENSCAPP00000003097	MRPS18B	ENSCAPP00000003097	ENSCAPP00000000117	annotation not available	Mitochondrial ribosomal protein S18B.	0.997
ENSCAPP00000003097	MRPS2	ENSCAPP00000003097	ENSCAPP00000000615	annotation not available	Mitochondrial ribosomal protein S2.	0.998
ENSCAPP00000003097	MRPS25	ENSCAPP00000003097	ENSCAPP00000003275	annotation not available	Mitochondrial ribosomal protein S25.	0.998
ENSCAPP00000003097	MRPS5	ENSCAPP00000003097	ENSCAPP00000016584	annotation not available	Mitochondrial ribosomal protein S5.	0.997
ENSCAPP00000003097	TRMT10B	ENSCAPP00000003097	ENSCAPP00000002269	annotation not available	tRNA methyltransferase 10B.	0.959
ENSCAPP00000004389	ENSCAPP00000003097	ENSCAPP00000004389	ENSCAPP00000003097	annotation not available	annotation not available	0.998
ENSCAPP00000004389	ENSCAPP00000011166	ENSCAPP00000004389	ENSCAPP00000011166	annotation not available	annotation not available	0.996
ENSCAPP00000004389	ENSCAPP00000012831	ENSCAPP00000004389	ENSCAPP00000012831	annotation not available	annotation not available	0.996
ENSCAPP00000004389	MRPS18B	ENSCAPP00000004389	ENSCAPP00000000117	annotation not available	Mitochondrial ribosomal protein S18B.	0.997
ENSCAPP00000004389	MRPS2	ENSCAPP00000004389	ENSCAPP00000000615	annotation not available	Mitochondrial ribosomal protein S2.	0.998
ENSCAPP00000004389	MRPS25	ENSCAPP00000004389	ENSCAPP00000003275	annotation not available	Mitochondrial ribosomal protein S25.	0.995
ENSCAPP00000004389	MRPS5	ENSCAPP00000004389	ENSCAPP00000016584	annotation not available	Mitochondrial ribosomal protein S5.	0.993
ENSCAPP00000004389	TRMT10B	ENSCAPP00000004389	ENSCAPP00000002269	annotation not available	tRNA methyltransferase 10B.	0.959
ENSCAPP00000011166	ENSCAPP00000003097	ENSCAPP00000011166	ENSCAPP00000003097	annotation not available	annotation not available	0.996
ENSCAPP00000011166	ENSCAPP00000004389	ENSCAPP00000011166	ENSCAPP00000004389	annotation not available	annotation not available	0.996
ENSCAPP00000011166	ENSCAPP00000012831	ENSCAPP00000011166	ENSCAPP00000012831	annotation not available	annotation not available	0.998
ENSCAPP00000011166	MRPS18B	ENSCAPP00000011166	ENSCAPP00000000117	annotation not available	Mitochondrial ribosomal protein S18B.	0.998