Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000002272annotation not available (260 aa)    
Predicted Functional Partners:
GRAMD2B
GRAM domain containing 2B.
    
 
 0.742
SCN2B
Sodium voltage-gated channel beta subunit 2.
    
 0.638
COPG1
Coatomer protein complex subunit gamma 1.
    
   0.602
SCN4B
Sodium voltage-gated channel beta subunit 4.
    
 0.595
DCST1
DC-STAMP domain containing 1.
      
 0.568
ALDH8A1
Aldehyde dehydrogenase 8 family member A1.
      
 0.562
GRAMD1B
GRAM domain containing 1B.
    
   0.541
ARCN1
Archain 1.
    
   0.529
COPA
Coatomer protein complex subunit alpha.
    
   0.480
TBC1D8
TBC1 domain family member 8.
      
 0.443
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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