RPAP1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RPAP1

RNA polymerase II associated protein 1. (1356 aa)

Predicted Functional Partners:

ENSCAPP00000017743

0.993

GPN1

0.989

ENSCAPP00000005711

0.958

ENSCAPP00000012872

0.936

POLR2C

0.932

POLR2B

0.859

ENSCAPP00000005654

0.751

RPAP3

0.703

ENSCAPP00000010381

0.671

ENSCAPP00000002220

0.666

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002220	RPAP1	ENSCAPP00000002220	ENSCAPP00000002282	annotation not available	RNA polymerase II associated protein 1.	0.666
ENSCAPP00000005654	ENSCAPP00000005711	ENSCAPP00000005654	ENSCAPP00000005711	annotation not available	annotation not available	0.988
ENSCAPP00000005654	ENSCAPP00000012872	ENSCAPP00000005654	ENSCAPP00000012872	annotation not available	annotation not available	0.979
ENSCAPP00000005654	ENSCAPP00000017743	ENSCAPP00000005654	ENSCAPP00000017743	annotation not available	annotation not available	0.773
ENSCAPP00000005654	GPN1	ENSCAPP00000005654	ENSCAPP00000014727	annotation not available	GPN-loop GTPase 1.	0.991
ENSCAPP00000005654	POLR2B	ENSCAPP00000005654	ENSCAPP00000013188	annotation not available	RNA polymerase II subunit B.	0.974
ENSCAPP00000005654	POLR2C	ENSCAPP00000005654	ENSCAPP00000003955	annotation not available	RNA polymerase II subunit C.	0.981
ENSCAPP00000005654	RPAP1	ENSCAPP00000005654	ENSCAPP00000002282	annotation not available	RNA polymerase II associated protein 1.	0.751
ENSCAPP00000005654	RPAP3	ENSCAPP00000005654	ENSCAPP00000012170	annotation not available	RNA polymerase II associated protein 3.	0.959
ENSCAPP00000005711	ENSCAPP00000005654	ENSCAPP00000005711	ENSCAPP00000005654	annotation not available	annotation not available	0.988
ENSCAPP00000005711	ENSCAPP00000012872	ENSCAPP00000005711	ENSCAPP00000012872	annotation not available	annotation not available	0.985
ENSCAPP00000005711	ENSCAPP00000017743	ENSCAPP00000005711	ENSCAPP00000017743	annotation not available	annotation not available	0.961
ENSCAPP00000005711	GPN1	ENSCAPP00000005711	ENSCAPP00000014727	annotation not available	GPN-loop GTPase 1.	0.959
ENSCAPP00000005711	POLR2B	ENSCAPP00000005711	ENSCAPP00000013188	annotation not available	RNA polymerase II subunit B.	0.994
ENSCAPP00000005711	POLR2C	ENSCAPP00000005711	ENSCAPP00000003955	annotation not available	RNA polymerase II subunit C.	0.994
ENSCAPP00000005711	RPAP1	ENSCAPP00000005711	ENSCAPP00000002282	annotation not available	RNA polymerase II associated protein 1.	0.958
ENSCAPP00000010381	RPAP1	ENSCAPP00000010381	ENSCAPP00000002282	annotation not available	RNA polymerase II associated protein 1.	0.671
ENSCAPP00000012872	ENSCAPP00000005654	ENSCAPP00000012872	ENSCAPP00000005654	annotation not available	annotation not available	0.979
ENSCAPP00000012872	ENSCAPP00000005711	ENSCAPP00000012872	ENSCAPP00000005711	annotation not available	annotation not available	0.985
ENSCAPP00000012872	ENSCAPP00000017743	ENSCAPP00000012872	ENSCAPP00000017743	annotation not available	annotation not available	0.957