Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000002304annotation not available (282 aa)    
Predicted Functional Partners:
ENSCAPP00000008997
annotation not available
   
    0.828
RUBCNL
Rubicon like autophagy enhancer.
   
    0.828
CWC25
CWC25 spliceosome associated protein homolog.
   
    0.828
PGM2
Phosphoglucomutase 2.
   
    0.828
FTSJ1
FtsJ RNA 2'-O-methyltransferase 1.
   
    0.719
ACOT12
acyl-CoA thioesterase 12.
   
    0.698
ACOT11
acyl-CoA thioesterase 11.
   
    0.698
CALHM2
Calcium homeostasis modulator family member 2.
   
    0.698
ENSCAPP00000013050
annotation not available
   
    0.698
LIX1
Limb and CNS expressed 1.
   
    0.690
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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