STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX55DEAD-box helicase 55. (594 aa)    
Predicted Functional Partners:
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
  
 0.999
WDR12
WD repeat domain 12.
   
 0.999
GTPBP4
GTP binding protein 4.
   
 0.998
BOP1
BOP1 ribosomal biogenesis factor.
   
 0.998
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 0.998
ENSCAPP00000001460
annotation not available
   
 0.997
NOC3L
NOC3 like DNA replication regulator.
   
 0.997
ENSCAPP00000010582
annotation not available
   
 0.997
BRIX1
Biogenesis of ribosomes BRX1.
   
 0.996
DDX18
DEAD-box helicase 18.
  
 
0.995
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.