DDX55 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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gene co-occurrence

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[Homology]

Score

DDX55

DEAD-box helicase 55. (594 aa)

Predicted Functional Partners:

FTSJ3

0.997

WDR12

0.997

BOP1

0.994

DDX54

0.993

GTPBP4

0.993

ENSCAPP00000010582

0.993

ENSCAPP00000014188

0.993

ENSCAPP00000001460

0.992

NOC3L

0.992

GNL2

0.991

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	DDX54	ENSCAPP00000002700	ENSCAPP00000001001	BOP1 ribosomal biogenesis factor.	DEAD-box helicase 54.	0.997
BOP1	DDX55	ENSCAPP00000002700	ENSCAPP00000002308	BOP1 ribosomal biogenesis factor.	DEAD-box helicase 55.	0.994
BOP1	ENSCAPP00000001460	ENSCAPP00000002700	ENSCAPP00000001460	BOP1 ribosomal biogenesis factor.	annotation not available	0.997
BOP1	ENSCAPP00000010582	ENSCAPP00000002700	ENSCAPP00000010582	BOP1 ribosomal biogenesis factor.	annotation not available	0.999
BOP1	ENSCAPP00000014188	ENSCAPP00000002700	ENSCAPP00000014188	BOP1 ribosomal biogenesis factor.	annotation not available	0.999
BOP1	FTSJ3	ENSCAPP00000002700	ENSCAPP00000016842	BOP1 ribosomal biogenesis factor.	FtsJ RNA 2'-O-methyltransferase 3.	0.999
BOP1	GNL2	ENSCAPP00000002700	ENSCAPP00000017947	BOP1 ribosomal biogenesis factor.	G protein nucleolar 2.	0.998
BOP1	GTPBP4	ENSCAPP00000002700	ENSCAPP00000001224	BOP1 ribosomal biogenesis factor.	GTP binding protein 4.	0.997
BOP1	NOC3L	ENSCAPP00000002700	ENSCAPP00000006072	BOP1 ribosomal biogenesis factor.	NOC3 like DNA replication regulator.	0.997
BOP1	WDR12	ENSCAPP00000002700	ENSCAPP00000017187	BOP1 ribosomal biogenesis factor.	WD repeat domain 12.	0.999
DDX54	BOP1	ENSCAPP00000001001	ENSCAPP00000002700	DEAD-box helicase 54.	BOP1 ribosomal biogenesis factor.	0.997
DDX54	DDX55	ENSCAPP00000001001	ENSCAPP00000002308	DEAD-box helicase 54.	DEAD-box helicase 55.	0.993
DDX54	ENSCAPP00000001460	ENSCAPP00000001001	ENSCAPP00000001460	DEAD-box helicase 54.	annotation not available	0.991
DDX54	ENSCAPP00000010582	ENSCAPP00000001001	ENSCAPP00000010582	DEAD-box helicase 54.	annotation not available	0.994
DDX54	ENSCAPP00000014188	ENSCAPP00000001001	ENSCAPP00000014188	DEAD-box helicase 54.	annotation not available	0.994
DDX54	FTSJ3	ENSCAPP00000001001	ENSCAPP00000016842	DEAD-box helicase 54.	FtsJ RNA 2'-O-methyltransferase 3.	0.997
DDX54	GNL2	ENSCAPP00000001001	ENSCAPP00000017947	DEAD-box helicase 54.	G protein nucleolar 2.	0.969
DDX54	GTPBP4	ENSCAPP00000001001	ENSCAPP00000001224	DEAD-box helicase 54.	GTP binding protein 4.	0.995
DDX54	NOC3L	ENSCAPP00000001001	ENSCAPP00000006072	DEAD-box helicase 54.	NOC3 like DNA replication regulator.	0.990
DDX54	WDR12	ENSCAPP00000001001	ENSCAPP00000017187	DEAD-box helicase 54.	WD repeat domain 12.	0.993