STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHKBP1SH3KBP1 binding protein 1. (608 aa)    
Predicted Functional Partners:
KCTD3
Potassium channel tetramerization domain containing 3.
    
  0.966
CUL3
Cullin 3.
    
 0.952
ENSCAPP00000004807
annotation not available
    
   0.942
ENSCAPP00000005376
annotation not available
    
 
 0.932
SNX27
Sorting nexin 27.
    
   0.892
PUS3
Pseudouridine synthase 3.
      
 0.861
GLTP
Glycolipid transfer protein.
    
   0.840
PIH1D1
PIH1 domain containing 1.
    
   0.833
LRRC40
Leucine rich repeat containing 40.
    
   0.829
CARM1
Coactivator associated arginine methyltransferase 1.
    
   0.819
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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