Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TTC39ATetratricopeptide repeat domain 39A. (519 aa)    
Predicted Functional Partners:
VAPB
VAMP associated protein B and C.
    
   0.720
ENSCAPP00000010066
annotation not available
      
 0.662
CMTR1
Cap methyltransferase 1.
      
 0.659
NIPAL2
NIPA like domain containing 2.
   
  
 0.613
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
      
 0.571
NKD1
NKD inhibitor of WNT signaling pathway 1.
      
 0.569
ENSCAPP00000018326
annotation not available
      
 0.534
ENSCAPP00000009455
annotation not available
      
 0.517
VAPA
VAMP associated protein A.
    
   0.491
ENSCAPP00000018476
annotation not available
      
 0.460
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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