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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFNStratifin. (248 aa)    
Predicted Functional Partners:
TP53
Tumor protein p53.
    
 0.977
MDM4
MDM4 regulator of p53.
    
 0.940
NEDD4L
NEDD4 like E3 ubiquitin protein ligase.
    
 0.940
CCNB2
Cyclin B2.
    
 0.936
ENSCAPP00000010800
annotation not available
    
 0.910
CDK1
Cyclin dependent kinase 1.
  
 0.895
ENSCAPP00000015456
annotation not available
   
  0.863
SOS1
SOS Ras/Rac guanine nucleotide exchange factor 1.
   
 0.858
ENSCAPP00000011154
annotation not available
    
 0.852
BRAF
B-Raf proto-oncogene, serine/threonine kinase.
   
 0.851
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.