PRRC2B protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

PRRC2B

Proline rich coiled-coil 2B. (1456 aa)

Predicted Functional Partners:

EIF3H

0.959

EIF3G

0.957

YTHDF1

0.930

ENSCAPP00000001114

0.926

ENSCAPP00000005421

0.926

ENSCAPP00000009766

0.914

ENSCAPP00000010162

0.914

ENSCAPP00000008430

0.880

ENSCAPP00000010502

0.880

ENSCAPP00000011388

0.880

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF3G	EIF3H	ENSCAPP00000000284	ENSCAPP00000006414	Eukaryotic translation initiation factor 3 subunit G.	Eukaryotic translation initiation factor 3 subunit H.	0.999
EIF3G	ENSCAPP00000001114	ENSCAPP00000000284	ENSCAPP00000001114	Eukaryotic translation initiation factor 3 subunit G.	annotation not available	0.998
EIF3G	ENSCAPP00000005421	ENSCAPP00000000284	ENSCAPP00000005421	Eukaryotic translation initiation factor 3 subunit G.	annotation not available	0.998
EIF3G	ENSCAPP00000008430	ENSCAPP00000000284	ENSCAPP00000008430	Eukaryotic translation initiation factor 3 subunit G.	annotation not available	0.987
EIF3G	ENSCAPP00000009766	ENSCAPP00000000284	ENSCAPP00000009766	Eukaryotic translation initiation factor 3 subunit G.	annotation not available	0.995
EIF3G	ENSCAPP00000010162	ENSCAPP00000000284	ENSCAPP00000010162	Eukaryotic translation initiation factor 3 subunit G.	annotation not available	0.995
EIF3G	ENSCAPP00000010502	ENSCAPP00000000284	ENSCAPP00000010502	Eukaryotic translation initiation factor 3 subunit G.	annotation not available	0.987
EIF3G	ENSCAPP00000011388	ENSCAPP00000000284	ENSCAPP00000011388	Eukaryotic translation initiation factor 3 subunit G.	annotation not available	0.987
EIF3G	PRRC2B	ENSCAPP00000000284	ENSCAPP00000002352	Eukaryotic translation initiation factor 3 subunit G.	Proline rich coiled-coil 2B.	0.957
EIF3H	EIF3G	ENSCAPP00000006414	ENSCAPP00000000284	Eukaryotic translation initiation factor 3 subunit H.	Eukaryotic translation initiation factor 3 subunit G.	0.999
EIF3H	ENSCAPP00000001114	ENSCAPP00000006414	ENSCAPP00000001114	Eukaryotic translation initiation factor 3 subunit H.	annotation not available	0.997
EIF3H	ENSCAPP00000005421	ENSCAPP00000006414	ENSCAPP00000005421	Eukaryotic translation initiation factor 3 subunit H.	annotation not available	0.997
EIF3H	ENSCAPP00000008430	ENSCAPP00000006414	ENSCAPP00000008430	Eukaryotic translation initiation factor 3 subunit H.	annotation not available	0.994
EIF3H	ENSCAPP00000009766	ENSCAPP00000006414	ENSCAPP00000009766	Eukaryotic translation initiation factor 3 subunit H.	annotation not available	0.999
EIF3H	ENSCAPP00000010162	ENSCAPP00000006414	ENSCAPP00000010162	Eukaryotic translation initiation factor 3 subunit H.	annotation not available	0.999
EIF3H	ENSCAPP00000010502	ENSCAPP00000006414	ENSCAPP00000010502	Eukaryotic translation initiation factor 3 subunit H.	annotation not available	0.994
EIF3H	ENSCAPP00000011388	ENSCAPP00000006414	ENSCAPP00000011388	Eukaryotic translation initiation factor 3 subunit H.	annotation not available	0.994
EIF3H	PRRC2B	ENSCAPP00000006414	ENSCAPP00000002352	Eukaryotic translation initiation factor 3 subunit H.	Proline rich coiled-coil 2B.	0.959
ENSCAPP00000001114	EIF3G	ENSCAPP00000001114	ENSCAPP00000000284	annotation not available	Eukaryotic translation initiation factor 3 subunit G.	0.998
ENSCAPP00000001114	EIF3H	ENSCAPP00000001114	ENSCAPP00000006414	annotation not available	Eukaryotic translation initiation factor 3 subunit H.	0.997