Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLC47A1Solute carrier family 47 member 1. (520 aa)    
Predicted Functional Partners:
ENSCAPP00000014263
annotation not available
   
 
  0.725
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
   
  
 0.720
SLC22A2
Solute carrier family 22 member 2.
   
  
 0.703
TRMT10B
tRNA methyltransferase 10B.
   
 0.700
TRMT10A
tRNA methyltransferase 10A.
   
 0.700
TBP
TATA-box binding protein.
   
    0.661
ENSCAPP00000015721
annotation not available
   
    0.661
TBPL1
TATA-box binding protein like 1.
   
    0.661
NDUFAF6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
   
  
 0.659
PDCD11
Programmed cell death 11.
  
    0.654
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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