Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMCN2Hemicentin 2. (4755 aa)    
Predicted Functional Partners:
HDGFL3
HDGF like 3.
      
 0.657
NTNG1
Netrin G1.
    
 0.588
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
    
 
 0.574
MYOF
Myoferlin.
      
 0.570
ENOX2
ecto-NOX disulfide-thiol exchanger 2.
      
 0.569
PLA2G4A
Phospholipase A2 group IVA.
     
  0.550
LRIT3
Leucine rich repeat, Ig-like and transmembrane domains 3.
    
 0.542
LRIT1
Leucine rich repeat, Ig-like and transmembrane domains 1.
    
 0.542
LGR4
Leucine rich repeat containing G protein-coupled receptor 4.
    
  0.499
RXFP1
Relaxin family peptide receptor 1.
    
  0.499
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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