Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM71Tripartite motif containing 71. (528 aa)    
Predicted Functional Partners:
AGO2
Argonaute RISC catalytic component 2.
    
 0.895
BICC1
BicC family RNA binding protein 1.
      
 0.782
ENSCAPP00000011868
annotation not available
    
 
 0.709
ENSCAPP00000003634
annotation not available
    
 
 0.695
ZNF362
Zinc finger protein 362.
    
 0.670
CAPN3
Calpain 3.
      
 0.662
BBOX1
Gamma-butyrobetaine hydroxylase 1.
      
 0.614
DPH6
Diphthamine biosynthesis 6.
    
 
 0.612
ENSCAPP00000009222
annotation not available
    
 
 0.608
GBE1
1,4-alpha-glucan branching enzyme 1.
      
 0.599
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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