ILRUN protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ILRUN

Inflammation and lipid regulator with UBA-like and NBR1-like domains. (217 aa)

Predicted Functional Partners:

ENSCAPP00000010142

0.823

GABARAPL2

0.823

ENSCAPP00000017351

0.823

ENSCAPP00000007899

0.732

ENSCAPP00000013360

0.732

ENSCAPP00000005006

0.724

SQSTM1

0.724

ENSCAPP00000017532

0.724

ATP6V0A4

0.714

ATP6V0A1

0.714

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V0A1	ATP6V0A4	ENSCAPP00000007619	ENSCAPP00000004482	ATPase H+ transporting V0 subunit a1.	ATPase H+ transporting V0 subunit a4.	0.924
ATP6V0A1	ILRUN	ENSCAPP00000007619	ENSCAPP00000002388	ATPase H+ transporting V0 subunit a1.	Inflammation and lipid regulator with UBA-like and NBR1-like domains.	0.714
ATP6V0A4	ATP6V0A1	ENSCAPP00000004482	ENSCAPP00000007619	ATPase H+ transporting V0 subunit a4.	ATPase H+ transporting V0 subunit a1.	0.924
ATP6V0A4	ILRUN	ENSCAPP00000004482	ENSCAPP00000002388	ATPase H+ transporting V0 subunit a4.	Inflammation and lipid regulator with UBA-like and NBR1-like domains.	0.714
ENSCAPP00000005006	ENSCAPP00000007899	ENSCAPP00000005006	ENSCAPP00000007899	annotation not available	annotation not available	0.839
ENSCAPP00000005006	ENSCAPP00000010142	ENSCAPP00000005006	ENSCAPP00000010142	annotation not available	annotation not available	0.999
ENSCAPP00000005006	ENSCAPP00000013360	ENSCAPP00000005006	ENSCAPP00000013360	annotation not available	annotation not available	0.839
ENSCAPP00000005006	ENSCAPP00000017351	ENSCAPP00000005006	ENSCAPP00000017351	annotation not available	annotation not available	0.999
ENSCAPP00000005006	ENSCAPP00000017532	ENSCAPP00000005006	ENSCAPP00000017532	annotation not available	annotation not available	0.949
ENSCAPP00000005006	GABARAPL2	ENSCAPP00000005006	ENSCAPP00000016278	annotation not available	GABA type A receptor associated protein like 2.	0.999
ENSCAPP00000005006	ILRUN	ENSCAPP00000005006	ENSCAPP00000002388	annotation not available	Inflammation and lipid regulator with UBA-like and NBR1-like domains.	0.724
ENSCAPP00000005006	SQSTM1	ENSCAPP00000005006	ENSCAPP00000012680	annotation not available	Sequestosome 1.	0.981
ENSCAPP00000007899	ENSCAPP00000005006	ENSCAPP00000007899	ENSCAPP00000005006	annotation not available	annotation not available	0.839
ENSCAPP00000007899	ENSCAPP00000010142	ENSCAPP00000007899	ENSCAPP00000010142	annotation not available	annotation not available	0.923
ENSCAPP00000007899	ENSCAPP00000013360	ENSCAPP00000007899	ENSCAPP00000013360	annotation not available	annotation not available	0.928
ENSCAPP00000007899	ENSCAPP00000017351	ENSCAPP00000007899	ENSCAPP00000017351	annotation not available	annotation not available	0.923
ENSCAPP00000007899	GABARAPL2	ENSCAPP00000007899	ENSCAPP00000016278	annotation not available	GABA type A receptor associated protein like 2.	0.923
ENSCAPP00000007899	ILRUN	ENSCAPP00000007899	ENSCAPP00000002388	annotation not available	Inflammation and lipid regulator with UBA-like and NBR1-like domains.	0.732
ENSCAPP00000010142	ENSCAPP00000005006	ENSCAPP00000010142	ENSCAPP00000005006	annotation not available	annotation not available	0.999
ENSCAPP00000010142	ENSCAPP00000007899	ENSCAPP00000010142	ENSCAPP00000007899	annotation not available	annotation not available	0.923