ASB13 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASB13

Ankyrin repeat and SOCS box containing 13. (256 aa)

Predicted Functional Partners:

CUL5

0.976

ENSCAPP00000016562

0.882

ENSCAPP00000005342

0.869

ELOC

0.801

ENSCAPP00000010874

0.801

ASB4

0.771

MYSM1

0.753

LRRC41

0.748

SPSB3

0.747

ASB6

0.736

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB13	ASB4	ENSCAPP00000002403	ENSCAPP00000000866	Ankyrin repeat and SOCS box containing 13.	Ankyrin repeat and SOCS box containing 4.	0.771
ASB13	ASB6	ENSCAPP00000002403	ENSCAPP00000010241	Ankyrin repeat and SOCS box containing 13.	Ankyrin repeat and SOCS box containing 6.	0.736
ASB13	CUL5	ENSCAPP00000002403	ENSCAPP00000012653	Ankyrin repeat and SOCS box containing 13.	Cullin 5.	0.976
ASB13	ELOC	ENSCAPP00000002403	ENSCAPP00000003711	Ankyrin repeat and SOCS box containing 13.	Elongin C.	0.801
ASB13	ENSCAPP00000005342	ENSCAPP00000002403	ENSCAPP00000005342	Ankyrin repeat and SOCS box containing 13.	annotation not available	0.869
ASB13	ENSCAPP00000010874	ENSCAPP00000002403	ENSCAPP00000010874	Ankyrin repeat and SOCS box containing 13.	annotation not available	0.801
ASB13	ENSCAPP00000016562	ENSCAPP00000002403	ENSCAPP00000016562	Ankyrin repeat and SOCS box containing 13.	annotation not available	0.882
ASB13	LRRC41	ENSCAPP00000002403	ENSCAPP00000015963	Ankyrin repeat and SOCS box containing 13.	Leucine rich repeat containing 41.	0.748
ASB13	MYSM1	ENSCAPP00000002403	ENSCAPP00000004064	Ankyrin repeat and SOCS box containing 13.	Myb like, SWIRM and MPN domains 1.	0.753
ASB13	SPSB3	ENSCAPP00000002403	ENSCAPP00000007288	Ankyrin repeat and SOCS box containing 13.	splA/ryanodine receptor domain and SOCS box containing 3.	0.747
ASB4	ASB13	ENSCAPP00000000866	ENSCAPP00000002403	Ankyrin repeat and SOCS box containing 4.	Ankyrin repeat and SOCS box containing 13.	0.771
ASB4	ASB6	ENSCAPP00000000866	ENSCAPP00000010241	Ankyrin repeat and SOCS box containing 4.	Ankyrin repeat and SOCS box containing 6.	0.731
ASB4	CUL5	ENSCAPP00000000866	ENSCAPP00000012653	Ankyrin repeat and SOCS box containing 4.	Cullin 5.	0.988
ASB4	ELOC	ENSCAPP00000000866	ENSCAPP00000003711	Ankyrin repeat and SOCS box containing 4.	Elongin C.	0.812
ASB4	ENSCAPP00000005342	ENSCAPP00000000866	ENSCAPP00000005342	Ankyrin repeat and SOCS box containing 4.	annotation not available	0.952
ASB4	ENSCAPP00000010874	ENSCAPP00000000866	ENSCAPP00000010874	Ankyrin repeat and SOCS box containing 4.	annotation not available	0.812
ASB4	ENSCAPP00000016562	ENSCAPP00000000866	ENSCAPP00000016562	Ankyrin repeat and SOCS box containing 4.	annotation not available	0.930
ASB4	MYSM1	ENSCAPP00000000866	ENSCAPP00000004064	Ankyrin repeat and SOCS box containing 4.	Myb like, SWIRM and MPN domains 1.	0.753
ASB4	SPSB3	ENSCAPP00000000866	ENSCAPP00000007288	Ankyrin repeat and SOCS box containing 4.	splA/ryanodine receptor domain and SOCS box containing 3.	0.916
ASB6	ASB13	ENSCAPP00000010241	ENSCAPP00000002403	Ankyrin repeat and SOCS box containing 6.	Ankyrin repeat and SOCS box containing 13.	0.736