GATA3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

GATA3

GATA binding protein 3. (395 aa)

Predicted Functional Partners:

TBX21

0.995

TAL1

0.991

HDAC1

0.980

HDAC2

0.960

EP300

0.959

PAX2

0.942

SPI1

0.941

USP21

0.938

ENSCAPP00000002817

0.931

ENSCAPP00000007887

0.931

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002817	ENSCAPP00000007887	ENSCAPP00000002817	ENSCAPP00000007887	annotation not available	annotation not available	0.894
ENSCAPP00000002817	EP300	ENSCAPP00000002817	ENSCAPP00000017514	annotation not available	E1A binding protein p300.	0.980
ENSCAPP00000002817	GATA3	ENSCAPP00000002817	ENSCAPP00000002419	annotation not available	GATA binding protein 3.	0.931
ENSCAPP00000002817	HDAC1	ENSCAPP00000002817	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.965
ENSCAPP00000002817	HDAC2	ENSCAPP00000002817	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.910
ENSCAPP00000007887	ENSCAPP00000002817	ENSCAPP00000007887	ENSCAPP00000002817	annotation not available	annotation not available	0.894
ENSCAPP00000007887	EP300	ENSCAPP00000007887	ENSCAPP00000017514	annotation not available	E1A binding protein p300.	0.980
ENSCAPP00000007887	GATA3	ENSCAPP00000007887	ENSCAPP00000002419	annotation not available	GATA binding protein 3.	0.931
ENSCAPP00000007887	HDAC1	ENSCAPP00000007887	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.965
ENSCAPP00000007887	HDAC2	ENSCAPP00000007887	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.910
EP300	ENSCAPP00000002817	ENSCAPP00000017514	ENSCAPP00000002817	E1A binding protein p300.	annotation not available	0.980
EP300	ENSCAPP00000007887	ENSCAPP00000017514	ENSCAPP00000007887	E1A binding protein p300.	annotation not available	0.980
EP300	GATA3	ENSCAPP00000017514	ENSCAPP00000002419	E1A binding protein p300.	GATA binding protein 3.	0.959
EP300	HDAC1	ENSCAPP00000017514	ENSCAPP00000015327	E1A binding protein p300.	Histone deacetylase 1.	0.991
EP300	HDAC2	ENSCAPP00000017514	ENSCAPP00000016491	E1A binding protein p300.	Histone deacetylase 2.	0.952
EP300	PAX2	ENSCAPP00000017514	ENSCAPP00000011531	E1A binding protein p300.	Paired box 2.	0.541
EP300	SPI1	ENSCAPP00000017514	ENSCAPP00000008755	E1A binding protein p300.	Spi-1 proto-oncogene.	0.901
EP300	TAL1	ENSCAPP00000017514	ENSCAPP00000003564	E1A binding protein p300.	TAL bHLH transcription factor 1, erythroid differentiation factor.	0.935
GATA3	ENSCAPP00000002817	ENSCAPP00000002419	ENSCAPP00000002817	GATA binding protein 3.	annotation not available	0.931
GATA3	ENSCAPP00000007887	ENSCAPP00000002419	ENSCAPP00000007887	GATA binding protein 3.	annotation not available	0.931