ASB1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ASB1

Ankyrin repeat and SOCS box containing 1. (337 aa)

Predicted Functional Partners:

CUL5

0.987

ENSCAPP00000016562

0.979

ELOC

0.923

ENSCAPP00000010874

0.923

ASB6

0.835

ENSCAPP00000005342

0.824

MYSM1

0.753

CASQ2

0.734

TRAF3IP1

0.725

SOCS2

0.663

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB1	ASB6	ENSCAPP00000002430	ENSCAPP00000010241	Ankyrin repeat and SOCS box containing 1.	Ankyrin repeat and SOCS box containing 6.	0.835
ASB1	CASQ2	ENSCAPP00000002430	ENSCAPP00000003971	Ankyrin repeat and SOCS box containing 1.	Calsequestrin 2.	0.734
ASB1	CUL5	ENSCAPP00000002430	ENSCAPP00000012653	Ankyrin repeat and SOCS box containing 1.	Cullin 5.	0.987
ASB1	ELOC	ENSCAPP00000002430	ENSCAPP00000003711	Ankyrin repeat and SOCS box containing 1.	Elongin C.	0.923
ASB1	ENSCAPP00000005342	ENSCAPP00000002430	ENSCAPP00000005342	Ankyrin repeat and SOCS box containing 1.	annotation not available	0.824
ASB1	ENSCAPP00000010874	ENSCAPP00000002430	ENSCAPP00000010874	Ankyrin repeat and SOCS box containing 1.	annotation not available	0.923
ASB1	ENSCAPP00000016562	ENSCAPP00000002430	ENSCAPP00000016562	Ankyrin repeat and SOCS box containing 1.	annotation not available	0.979
ASB1	MYSM1	ENSCAPP00000002430	ENSCAPP00000004064	Ankyrin repeat and SOCS box containing 1.	Myb like, SWIRM and MPN domains 1.	0.753
ASB1	SOCS2	ENSCAPP00000002430	ENSCAPP00000013927	Ankyrin repeat and SOCS box containing 1.	Suppressor of cytokine signaling 2.	0.663
ASB1	TRAF3IP1	ENSCAPP00000002430	ENSCAPP00000003144	Ankyrin repeat and SOCS box containing 1.	TRAF3 interacting protein 1.	0.725
ASB6	ASB1	ENSCAPP00000010241	ENSCAPP00000002430	Ankyrin repeat and SOCS box containing 6.	Ankyrin repeat and SOCS box containing 1.	0.835
ASB6	CUL5	ENSCAPP00000010241	ENSCAPP00000012653	Ankyrin repeat and SOCS box containing 6.	Cullin 5.	0.983
ASB6	ELOC	ENSCAPP00000010241	ENSCAPP00000003711	Ankyrin repeat and SOCS box containing 6.	Elongin C.	0.761
ASB6	ENSCAPP00000005342	ENSCAPP00000010241	ENSCAPP00000005342	Ankyrin repeat and SOCS box containing 6.	annotation not available	0.975
ASB6	ENSCAPP00000010874	ENSCAPP00000010241	ENSCAPP00000010874	Ankyrin repeat and SOCS box containing 6.	annotation not available	0.761
ASB6	ENSCAPP00000016562	ENSCAPP00000010241	ENSCAPP00000016562	Ankyrin repeat and SOCS box containing 6.	annotation not available	0.896
ASB6	MYSM1	ENSCAPP00000010241	ENSCAPP00000004064	Ankyrin repeat and SOCS box containing 6.	Myb like, SWIRM and MPN domains 1.	0.753
ASB6	SOCS2	ENSCAPP00000010241	ENSCAPP00000013927	Ankyrin repeat and SOCS box containing 6.	Suppressor of cytokine signaling 2.	0.436
CASQ2	ASB1	ENSCAPP00000003971	ENSCAPP00000002430	Calsequestrin 2.	Ankyrin repeat and SOCS box containing 1.	0.734
CASQ2	MYSM1	ENSCAPP00000003971	ENSCAPP00000004064	Calsequestrin 2.	Myb like, SWIRM and MPN domains 1.	0.787