Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THSD1Thrombospondin type 1 domain containing 1. (763 aa)    
Predicted Functional Partners:
VPS36
Vacuolar protein sorting 36 homolog.
  
   
 0.911
ENSCAPP00000014744
annotation not available
      
 0.756
NPHP1
Nephrocystin 1.
      
 0.615
TRIQK
Triple QxxK/R motif containing.
      
 0.515
DLGAP3
DLG associated protein 3.
  
     0.487
ENSCAPP00000010446
annotation not available
   
  
 0.461
POFUT2
Protein O-fucosyltransferase 2.
     
 0.461
ENSCAPP00000008632
annotation not available
      
 0.452
ZYG11A
Zyg-11 family member A, cell cycle regulator.
      
 0.436
B3GLCT
Beta 3-glucosyltransferase.
     
  0.422
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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