STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODR4Odr-4 GPCR localization factor homolog. (391 aa)    
Predicted Functional Partners:
UFSP2
UFM1 specific peptidase 2.
   
 
 0.945
DPM1
Dolichyl-phosphate mannosyltransferase subunit 1, catalytic.
   
  
 0.886
BTD
Biotinidase.
      
 0.747
TXNL1
Thioredoxin like 1.
      
 0.692
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
      
 0.675
ENSCAPP00000006005
annotation not available
      
 0.605
RTP2
Receptor transporter protein 2.
      
 0.567
ENSCAPP00000001303
annotation not available
      
 0.436
AP5Z1
Adaptor related protein complex 5 subunit zeta 1.
      
 0.427
RTP1
Receptor transporter protein 1.
      
 0.415
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.