Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PITX1Paired like homeodomain 1. (267 aa)    
Predicted Functional Partners:
ENSCAPP00000004704
annotation not available
    
   0.884
PITX2
Paired like homeodomain 2.
   
   0.856
CTNNB1
Catenin beta 1.
    
 
 0.838
TBX4
T-box transcription factor 4.
    
 
 0.768
AHCYL1
Adenosylhomocysteinase like 1.
    
   0.701
TBX19
T-box transcription factor 19.
    
 
 0.689
LHX3
LIM homeobox 3.
   
  
 0.671
ENSCAPP00000007831
annotation not available
   
  
 0.664
TBX5
T-box transcription factor 5.
    
 
 0.603
LEF1
Lymphoid enhancer binding factor 1.
    
 
 0.599
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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