Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BDNFBrain derived neurotrophic factor. (289 aa)    
Predicted Functional Partners:
NTRK2
Neurotrophic receptor tyrosine kinase 2.
    
 0.999
NTF4
Neurotrophin 4.
    
 0.992
NTRK1
Neurotrophic receptor tyrosine kinase 1.
    
 0.992
NGFR
Nerve growth factor receptor.
    
 0.977
ENSCAPP00000000757
annotation not available
    
 0.970
ENSCAPP00000016030
annotation not available
    
 0.970
NGF
Nerve growth factor.
   
 0.962
CNTF
Ciliary neurotrophic factor.
      
 0.949
PDGFRA
Platelet derived growth factor receptor alpha.
     
 0.946
FGFR1
Fibroblast growth factor receptor 1.
     
 0.938
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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