Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMADHCMetabolism of cobalamin associated D. (214 aa)    
Predicted Functional Partners:
MMACHC
Metabolism of cobalamin associated C.
    
 0.998
LMBRD1
LMBR1 domain containing 1.
      
 0.941
MTR
5-methyltetrahydrofolate-homocysteine methyltransferase.
    
 0.937
MMAA
Metabolism of cobalamin associated A.
      
 0.931
ENSCAPP00000011994
annotation not available
     
 0.924
MMAB
Metabolism of cobalamin associated B.
      
 0.899
GTDC1
Glycosyltransferase like domain containing 1.
      
 0.862
MMUT
methylmalonyl-CoA mutase.
   
  
 0.812
ORC4
Origin recognition complex subunit 4.
      
 0.687
ENSCAPP00000007065
annotation not available
   
  
 0.686
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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