Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000002514annotation not available (425 aa)    
Predicted Functional Partners:
PTPN6
Protein tyrosine phosphatase non-receptor type 6.
    
 0.890
PTPN11
Protein tyrosine phosphatase non-receptor type 11.
    
 0.880
ENSCAPP00000016316
annotation not available
    
 0.828
PTPRC
Protein tyrosine phosphatase receptor type C.
   
 0.795
LRP3
LDL receptor related protein 3.
     
 0.786
ENSCAPP00000014263
annotation not available
      
 0.782
APLP1
Amyloid beta precursor like protein 1.
      
 0.782
ENSCAPP00000000830
annotation not available
  
   
 0.754
NCAM1
Neural cell adhesion molecule 1.
    
 0.684
ENSCAPP00000013214
annotation not available
    
 0.674
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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