KLHDC8B protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KLHDC8B

Kelch domain containing 8B. (352 aa)

Predicted Functional Partners:

ENSCAPP00000003376

0.924

CCT3

0.884

ENSCAPP00000000754

0.823

ENSCAPP00000009606

0.823

ENSCAPP00000014670

0.823

ENSCAPP00000001476

0.795

TMEM184B

0.680

KBTBD12

0.676

RRP36

0.667

ENSCAPP00000003845

0.663

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCT3	ENSCAPP00000000754	ENSCAPP00000000785	ENSCAPP00000000754	Chaperonin containing TCP1 subunit 3.	annotation not available	0.998
CCT3	ENSCAPP00000001476	ENSCAPP00000000785	ENSCAPP00000001476	Chaperonin containing TCP1 subunit 3.	annotation not available	0.961
CCT3	ENSCAPP00000003376	ENSCAPP00000000785	ENSCAPP00000003376	Chaperonin containing TCP1 subunit 3.	annotation not available	0.999
CCT3	ENSCAPP00000009606	ENSCAPP00000000785	ENSCAPP00000009606	Chaperonin containing TCP1 subunit 3.	annotation not available	0.814
CCT3	ENSCAPP00000014670	ENSCAPP00000000785	ENSCAPP00000014670	Chaperonin containing TCP1 subunit 3.	annotation not available	0.998
CCT3	KLHDC8B	ENSCAPP00000000785	ENSCAPP00000002519	Chaperonin containing TCP1 subunit 3.	Kelch domain containing 8B.	0.884
ENSCAPP00000000754	CCT3	ENSCAPP00000000754	ENSCAPP00000000785	annotation not available	Chaperonin containing TCP1 subunit 3.	0.998
ENSCAPP00000000754	ENSCAPP00000001476	ENSCAPP00000000754	ENSCAPP00000001476	annotation not available	annotation not available	0.925
ENSCAPP00000000754	ENSCAPP00000003376	ENSCAPP00000000754	ENSCAPP00000003376	annotation not available	annotation not available	0.998
ENSCAPP00000000754	ENSCAPP00000009606	ENSCAPP00000000754	ENSCAPP00000009606	annotation not available	annotation not available	0.568
ENSCAPP00000000754	KLHDC8B	ENSCAPP00000000754	ENSCAPP00000002519	annotation not available	Kelch domain containing 8B.	0.823
ENSCAPP00000001476	CCT3	ENSCAPP00000001476	ENSCAPP00000000785	annotation not available	Chaperonin containing TCP1 subunit 3.	0.961
ENSCAPP00000001476	ENSCAPP00000000754	ENSCAPP00000001476	ENSCAPP00000000754	annotation not available	annotation not available	0.925
ENSCAPP00000001476	ENSCAPP00000003376	ENSCAPP00000001476	ENSCAPP00000003376	annotation not available	annotation not available	0.966
ENSCAPP00000001476	ENSCAPP00000009606	ENSCAPP00000001476	ENSCAPP00000009606	annotation not available	annotation not available	0.940
ENSCAPP00000001476	ENSCAPP00000014670	ENSCAPP00000001476	ENSCAPP00000014670	annotation not available	annotation not available	0.925
ENSCAPP00000001476	KLHDC8B	ENSCAPP00000001476	ENSCAPP00000002519	annotation not available	Kelch domain containing 8B.	0.795
ENSCAPP00000003376	CCT3	ENSCAPP00000003376	ENSCAPP00000000785	annotation not available	Chaperonin containing TCP1 subunit 3.	0.999
ENSCAPP00000003376	ENSCAPP00000000754	ENSCAPP00000003376	ENSCAPP00000000754	annotation not available	annotation not available	0.998
ENSCAPP00000003376	ENSCAPP00000001476	ENSCAPP00000003376	ENSCAPP00000001476	annotation not available	annotation not available	0.966