Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSRP1Structure specific recognition protein 1. (715 aa)    
Predicted Functional Partners:
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.999
ENSCAPP00000002257
annotation not available
    
  0.997
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.992
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.987
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.985
SUPT6H
SPT6 homolog, histone chaperone and transcription elongation factor.
   
 0.985
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
   
 0.984
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.980
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
   
 0.978
CDC73
Cell division cycle 73.
   
 0.976
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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