STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAPVD1GTPase activating protein and VPS9 domains 1. (1188 aa)    
Predicted Functional Partners:
RAB17
RAB17, member RAS oncogene family.
    
 0.897
ENSCAPP00000015204
annotation not available
    
 0.897
VPS35
VPS35 retromer complex component.
   
 0.806
ENSCAPP00000002664
annotation not available
     
 0.800
RABEP2
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.764
RABEP1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.764
ZHX2
Zinc fingers and homeoboxes 2.
    
 0.704
RAB22A
RAB22A, member RAS oncogene family.
    
 0.704
RAB24
RAB24, member RAS oncogene family.
    
 0.704
RAB31
RAB31, member RAS oncogene family.
    
 0.704
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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