Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WDR20WD repeat domain 20. (468 aa)    
Predicted Functional Partners:
WDR48
WD repeat domain 48.
    
 0.965
USP12
Ubiquitin specific peptidase 12.
    
 0.959
USP46
Ubiquitin specific peptidase 46.
    
 0.955
ENSCAPP00000002032
annotation not available
 
     0.919
PHLPP2
PH domain and leucine rich repeat protein phosphatase 2.
   
 
 0.851
PHLPP1
PH domain and leucine rich repeat protein phosphatase 1.
   
 
 0.848
GAK
Cyclin G associated kinase.
   
  0.726
USP1
Ubiquitin specific peptidase 1.
    
 0.695
USP35
Ubiquitin specific peptidase 35.
    
 0.670
USP38
Ubiquitin specific peptidase 38.
    
 0.670
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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