LCORL protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LCORL

Ligand dependent nuclear receptor corepressor like. (530 aa)

Predicted Functional Partners:

ENSCAPP00000015419

0.949

ENSCAPP00000012250

0.940

ENSCAPP00000007369

0.937

EZH2

0.926

PHF1

0.913

SUZ12

0.908

ENSCAPP00000007629

0.892

ENSCAPP00000006942

0.890

EZH1

0.844

ZNF516

0.839

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000006942	ENSCAPP00000007629	ENSCAPP00000006942	ENSCAPP00000007629	annotation not available	annotation not available	0.608
ENSCAPP00000006942	ENSCAPP00000012250	ENSCAPP00000006942	ENSCAPP00000012250	annotation not available	annotation not available	0.942
ENSCAPP00000006942	LCORL	ENSCAPP00000006942	ENSCAPP00000002601	annotation not available	Ligand dependent nuclear receptor corepressor like.	0.890
ENSCAPP00000007369	ENSCAPP00000007629	ENSCAPP00000007369	ENSCAPP00000007629	annotation not available	annotation not available	0.655
ENSCAPP00000007369	ENSCAPP00000015419	ENSCAPP00000007369	ENSCAPP00000015419	annotation not available	annotation not available	0.999
ENSCAPP00000007369	LCORL	ENSCAPP00000007369	ENSCAPP00000002601	annotation not available	Ligand dependent nuclear receptor corepressor like.	0.937
ENSCAPP00000007369	ZNF516	ENSCAPP00000007369	ENSCAPP00000010737	annotation not available	Zinc finger protein 516.	0.932
ENSCAPP00000007629	ENSCAPP00000006942	ENSCAPP00000007629	ENSCAPP00000006942	annotation not available	annotation not available	0.608
ENSCAPP00000007629	ENSCAPP00000007369	ENSCAPP00000007629	ENSCAPP00000007369	annotation not available	annotation not available	0.655
ENSCAPP00000007629	ENSCAPP00000012250	ENSCAPP00000007629	ENSCAPP00000012250	annotation not available	annotation not available	0.643
ENSCAPP00000007629	ENSCAPP00000015419	ENSCAPP00000007629	ENSCAPP00000015419	annotation not available	annotation not available	0.655
ENSCAPP00000007629	EZH1	ENSCAPP00000007629	ENSCAPP00000008111	annotation not available	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	0.650
ENSCAPP00000007629	EZH2	ENSCAPP00000007629	ENSCAPP00000011768	annotation not available	Enhancer of zeste 2 polycomb repressive complex 2 subunit.	0.650
ENSCAPP00000007629	LCORL	ENSCAPP00000007629	ENSCAPP00000002601	annotation not available	Ligand dependent nuclear receptor corepressor like.	0.892
ENSCAPP00000007629	PHF1	ENSCAPP00000007629	ENSCAPP00000018572	annotation not available	PHD finger protein 1.	0.515
ENSCAPP00000007629	SUZ12	ENSCAPP00000007629	ENSCAPP00000003981	annotation not available	SUZ12 polycomb repressive complex 2 subunit.	0.840
ENSCAPP00000007629	ZNF516	ENSCAPP00000007629	ENSCAPP00000010737	annotation not available	Zinc finger protein 516.	0.686
ENSCAPP00000012250	ENSCAPP00000006942	ENSCAPP00000012250	ENSCAPP00000006942	annotation not available	annotation not available	0.942
ENSCAPP00000012250	ENSCAPP00000007629	ENSCAPP00000012250	ENSCAPP00000007629	annotation not available	annotation not available	0.643
ENSCAPP00000012250	LCORL	ENSCAPP00000012250	ENSCAPP00000002601	annotation not available	Ligand dependent nuclear receptor corepressor like.	0.940