STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPS6KC1Ribosomal protein S6 kinase C1. (889 aa)    
Predicted Functional Partners:
USE1
Unconventional SNARE in the ER 1.
    
 0.996
STX5
Syntaxin 5.
    
 0.994
STX16
Syntaxin 16.
    
 0.993
RINT1
RAD50 interactor 1.
   
 0.993
GOSR1
Golgi SNAP receptor complex member 1.
    
 0.993
ENSCAPP00000010370
annotation not available
   
 
 0.992
STX18
Syntaxin 18.
    
 0.992
ZW10
Zw10 kinetochore protein.
    
 0.991
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene).
   
 0.975
SEC22A
SEC22 homolog A, vesicle trafficking protein.
   
 0.975
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.