EBF3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EBF3

EBF transcription factor 3. (339 aa)

Predicted Functional Partners:

ENSCAPP00000008956

0.833

EEF1G

0.672

LHX2

0.672

ZNF521

0.657

ZNF423

0.648

PAX5

0.624

UFD1

0.610

PLAA

0.586

ENSCAPP00000011047

0.555

SCD5

0.555

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EBF3	EEF1G	ENSCAPP00000002630	ENSCAPP00000000192	EBF transcription factor 3.	Eukaryotic translation elongation factor 1 gamma.	0.672
EBF3	ENSCAPP00000008956	ENSCAPP00000002630	ENSCAPP00000008956	EBF transcription factor 3.	annotation not available	0.833
EBF3	ENSCAPP00000011047	ENSCAPP00000002630	ENSCAPP00000011047	EBF transcription factor 3.	annotation not available	0.555
EBF3	LHX2	ENSCAPP00000002630	ENSCAPP00000017629	EBF transcription factor 3.	LIM homeobox 2.	0.672
EBF3	PAX5	ENSCAPP00000002630	ENSCAPP00000014868	EBF transcription factor 3.	Paired box 5.	0.624
EBF3	PLAA	ENSCAPP00000002630	ENSCAPP00000013315	EBF transcription factor 3.	Phospholipase A2 activating protein.	0.586
EBF3	SCD5	ENSCAPP00000002630	ENSCAPP00000012744	EBF transcription factor 3.	stearoyl-CoA desaturase 5.	0.555
EBF3	UFD1	ENSCAPP00000002630	ENSCAPP00000018444	EBF transcription factor 3.	Ubiquitin recognition factor in ER associated degradation 1.	0.610
EBF3	ZNF423	ENSCAPP00000002630	ENSCAPP00000014190	EBF transcription factor 3.	Zinc finger protein 423.	0.648
EBF3	ZNF521	ENSCAPP00000002630	ENSCAPP00000016168	EBF transcription factor 3.	Zinc finger protein 521.	0.657
EEF1G	EBF3	ENSCAPP00000000192	ENSCAPP00000002630	Eukaryotic translation elongation factor 1 gamma.	EBF transcription factor 3.	0.672
EEF1G	ENSCAPP00000008956	ENSCAPP00000000192	ENSCAPP00000008956	Eukaryotic translation elongation factor 1 gamma.	annotation not available	0.672
ENSCAPP00000008956	EBF3	ENSCAPP00000008956	ENSCAPP00000002630	annotation not available	EBF transcription factor 3.	0.833
ENSCAPP00000008956	EEF1G	ENSCAPP00000008956	ENSCAPP00000000192	annotation not available	Eukaryotic translation elongation factor 1 gamma.	0.672
ENSCAPP00000008956	ENSCAPP00000011047	ENSCAPP00000008956	ENSCAPP00000011047	annotation not available	annotation not available	0.555
ENSCAPP00000008956	LHX2	ENSCAPP00000008956	ENSCAPP00000017629	annotation not available	LIM homeobox 2.	0.604
ENSCAPP00000008956	PLAA	ENSCAPP00000008956	ENSCAPP00000013315	annotation not available	Phospholipase A2 activating protein.	0.586
ENSCAPP00000008956	SCD5	ENSCAPP00000008956	ENSCAPP00000012744	annotation not available	stearoyl-CoA desaturase 5.	0.555
ENSCAPP00000008956	UFD1	ENSCAPP00000008956	ENSCAPP00000018444	annotation not available	Ubiquitin recognition factor in ER associated degradation 1.	0.610
ENSCAPP00000008956	ZNF423	ENSCAPP00000008956	ENSCAPP00000014190	annotation not available	Zinc finger protein 423.	0.767