Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TFDP2Transcription factor Dp-2. (359 aa)    
Predicted Functional Partners:
E2F6
E2F transcription factor 6.
  
 0.998
E2F1
E2F transcription factor 1.
   
 0.997
RB1
RB transcriptional corepressor 1.
   
 0.997
ENSCAPP00000015542
annotation not available
   
 0.996
RBL1
RB transcriptional corepressor like 1.
   
 0.995
RBL2
RB transcriptional corepressor like 2.
   
 0.993
LIN37
Lin-37 DREAM MuvB core complex component.
    
 0.982
L3MBTL2
L3MBTL histone methyl-lysine binding protein 2.
   
 0.975
LIN9
Lin-9 DREAM MuvB core complex component.
   
 0.970
LIN54
Lin-54 DREAM MuvB core complex component.
   
 0.956
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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