ENSCAPP00000002649 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

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Experiments

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[Homology]

Score

ENSCAPP00000002649

annotation not available (161 aa)

Predicted Functional Partners:

RPL8

0.999

ENSCAPP00000004658

0.998

RPL19

0.998

ENSCAPP00000011065

0.998

RPL30

0.998

RPL4

0.998

RPL6

0.998

RPL3

0.997

ENSCAPP00000004779

0.997

RPL13A

0.997

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002649	ENSCAPP00000004658	ENSCAPP00000002649	ENSCAPP00000004658	annotation not available	annotation not available	0.998
ENSCAPP00000002649	ENSCAPP00000004779	ENSCAPP00000002649	ENSCAPP00000004779	annotation not available	annotation not available	0.997
ENSCAPP00000002649	ENSCAPP00000011065	ENSCAPP00000002649	ENSCAPP00000011065	annotation not available	annotation not available	0.998
ENSCAPP00000002649	RPL13A	ENSCAPP00000002649	ENSCAPP00000004820	annotation not available	Ribosomal protein L13a.	0.997
ENSCAPP00000002649	RPL19	ENSCAPP00000002649	ENSCAPP00000009304	annotation not available	Ribosomal protein L19.	0.998
ENSCAPP00000002649	RPL3	ENSCAPP00000002649	ENSCAPP00000002985	annotation not available	Ribosomal protein L3.	0.997
ENSCAPP00000002649	RPL30	ENSCAPP00000002649	ENSCAPP00000012081	annotation not available	Ribosomal protein L30.	0.998
ENSCAPP00000002649	RPL4	ENSCAPP00000002649	ENSCAPP00000013827	annotation not available	Ribosomal protein L4.	0.998
ENSCAPP00000002649	RPL6	ENSCAPP00000002649	ENSCAPP00000014432	annotation not available	Ribosomal protein L6.	0.998
ENSCAPP00000002649	RPL8	ENSCAPP00000002649	ENSCAPP00000003457	annotation not available	Ribosomal protein L8.	0.999
ENSCAPP00000004658	ENSCAPP00000002649	ENSCAPP00000004658	ENSCAPP00000002649	annotation not available	annotation not available	0.998
ENSCAPP00000004658	ENSCAPP00000004779	ENSCAPP00000004658	ENSCAPP00000004779	annotation not available	annotation not available	0.999
ENSCAPP00000004658	ENSCAPP00000011065	ENSCAPP00000004658	ENSCAPP00000011065	annotation not available	annotation not available	0.999
ENSCAPP00000004658	RPL13A	ENSCAPP00000004658	ENSCAPP00000004820	annotation not available	Ribosomal protein L13a.	0.999
ENSCAPP00000004658	RPL19	ENSCAPP00000004658	ENSCAPP00000009304	annotation not available	Ribosomal protein L19.	0.999
ENSCAPP00000004658	RPL3	ENSCAPP00000004658	ENSCAPP00000002985	annotation not available	Ribosomal protein L3.	0.999
ENSCAPP00000004658	RPL30	ENSCAPP00000004658	ENSCAPP00000012081	annotation not available	Ribosomal protein L30.	0.999
ENSCAPP00000004658	RPL4	ENSCAPP00000004658	ENSCAPP00000013827	annotation not available	Ribosomal protein L4.	0.999
ENSCAPP00000004658	RPL6	ENSCAPP00000004658	ENSCAPP00000014432	annotation not available	Ribosomal protein L6.	0.999
ENSCAPP00000004658	RPL8	ENSCAPP00000004658	ENSCAPP00000003457	annotation not available	Ribosomal protein L8.	0.999