Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GOLIM4Golgi integral membrane protein 4. (580 aa)    
Predicted Functional Partners:
B3GAT3
Beta-1,3-glucuronyltransferase 3.
    
   0.956
TM9SF2
Transmembrane 9 superfamily member 2.
      
 0.927
TMEM38B
Transmembrane protein 38B.
      
 0.888
ENSCAPP00000018460
annotation not available
      
 0.879
GALNT2
Polypeptide N-acetylgalactosaminyltransferase 2.
      
 0.719
SEMA6D
Semaphorin 6D.
      
 0.671
B3GAT1
Beta-1,3-glucuronyltransferase 1.
    
   0.622
ENSCAPP00000015203
annotation not available
      
 0.582
RIOK2
RIO kinase 2.
      
 0.580
AP5M1
Adaptor related protein complex 5 subunit mu 1.
      
 0.578
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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