Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PACS1Phosphofurin acidic cluster sorting protein 1. (870 aa)    
Predicted Functional Partners:
ENSCAPP00000007947
annotation not available
    
 
 0.986
GGA3
Golgi associated, gamma adaptin ear containing, ARF binding protein 3.
    
 
 0.833
SNX24
Sorting nexin 24.
    
   0.736
LEAP2
Liver enriched antimicrobial peptide 2.
    
   0.677
MRPL38
Mitochondrial ribosomal protein L38.
      
 0.622
TMEM33
Transmembrane protein 33.
      
 0.581
GMPPA
GDP-mannose pyrophosphorylase A.
      
 0.572
ENSCAPP00000009916
annotation not available
      
 0.568
CPD
Carboxypeptidase D.
      
 0.568
PKD2
Polycystin 2, transient receptor potential cation channel.
      
 0.566
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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