Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
USE1Unconventional SNARE in the ER 1. (236 aa)    
Predicted Functional Partners:
ENSCAPP00000003668
annotation not available
   
 0.999
STX18
Syntaxin 18.
    
 0.999
NAPA
NSF attachment protein alpha.
    
 0.998
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene).
    
 0.998
GOSR1
Golgi SNAP receptor complex member 1.
   
 0.998
STX5
Syntaxin 5.
    
 0.998
STX7
Syntaxin 7.
    
 0.998
STX12
Syntaxin 12.
    
 0.998
ENSCAPP00000010370
annotation not available
    
 0.997
ENSCAPP00000003732
annotation not available
   
 0.995
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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