BOP1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

BOP1

BOP1 ribosomal biogenesis factor. (650 aa)

Predicted Functional Partners:

NOC2L

0.999

ENSCAPP00000010582

0.999

ENSCAPP00000011601

0.999

MRTO4

0.999

ENSCAPP00000014188

0.999

FTSJ3

0.999

WDR12

0.999

DDX18

0.998

P2RY1

0.998

ENSCAPP00000005428

0.998

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	DDX18	ENSCAPP00000002700	ENSCAPP00000001910	BOP1 ribosomal biogenesis factor.	DEAD-box helicase 18.	0.998
BOP1	ENSCAPP00000005428	ENSCAPP00000002700	ENSCAPP00000005428	BOP1 ribosomal biogenesis factor.	annotation not available	0.998
BOP1	ENSCAPP00000010582	ENSCAPP00000002700	ENSCAPP00000010582	BOP1 ribosomal biogenesis factor.	annotation not available	0.999
BOP1	ENSCAPP00000011601	ENSCAPP00000002700	ENSCAPP00000011601	BOP1 ribosomal biogenesis factor.	annotation not available	0.999
BOP1	ENSCAPP00000014188	ENSCAPP00000002700	ENSCAPP00000014188	BOP1 ribosomal biogenesis factor.	annotation not available	0.999
BOP1	FTSJ3	ENSCAPP00000002700	ENSCAPP00000016842	BOP1 ribosomal biogenesis factor.	FtsJ RNA 2'-O-methyltransferase 3.	0.999
BOP1	MRTO4	ENSCAPP00000002700	ENSCAPP00000011622	BOP1 ribosomal biogenesis factor.	MRT4 homolog, ribosome maturation factor.	0.999
BOP1	NOC2L	ENSCAPP00000002700	ENSCAPP00000004318	BOP1 ribosomal biogenesis factor.	NOC2 like nucleolar associated transcriptional repressor.	0.999
BOP1	P2RY1	ENSCAPP00000002700	ENSCAPP00000002291	BOP1 ribosomal biogenesis factor.	Purinergic receptor P2Y1.	0.998
BOP1	WDR12	ENSCAPP00000002700	ENSCAPP00000017187	BOP1 ribosomal biogenesis factor.	WD repeat domain 12.	0.999
DDX18	BOP1	ENSCAPP00000001910	ENSCAPP00000002700	DEAD-box helicase 18.	BOP1 ribosomal biogenesis factor.	0.998
DDX18	ENSCAPP00000005428	ENSCAPP00000001910	ENSCAPP00000005428	DEAD-box helicase 18.	annotation not available	0.988
DDX18	ENSCAPP00000010582	ENSCAPP00000001910	ENSCAPP00000010582	DEAD-box helicase 18.	annotation not available	0.996
DDX18	ENSCAPP00000011601	ENSCAPP00000001910	ENSCAPP00000011601	DEAD-box helicase 18.	annotation not available	0.994
DDX18	ENSCAPP00000014188	ENSCAPP00000001910	ENSCAPP00000014188	DEAD-box helicase 18.	annotation not available	0.996
DDX18	FTSJ3	ENSCAPP00000001910	ENSCAPP00000016842	DEAD-box helicase 18.	FtsJ RNA 2'-O-methyltransferase 3.	0.997
DDX18	MRTO4	ENSCAPP00000001910	ENSCAPP00000011622	DEAD-box helicase 18.	MRT4 homolog, ribosome maturation factor.	0.996
DDX18	NOC2L	ENSCAPP00000001910	ENSCAPP00000004318	DEAD-box helicase 18.	NOC2 like nucleolar associated transcriptional repressor.	0.996
DDX18	P2RY1	ENSCAPP00000001910	ENSCAPP00000002291	DEAD-box helicase 18.	Purinergic receptor P2Y1.	0.985
DDX18	WDR12	ENSCAPP00000001910	ENSCAPP00000017187	DEAD-box helicase 18.	WD repeat domain 12.	0.997