PHC1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

PHC1

Polyhomeotic homolog 1. (914 aa)

Predicted Functional Partners:

SCMH1

0.807

ENSCAPP00000001276

0.728

PCGF2

0.728

C6

0.720

ENSCAPP00000010667

0.720

CBX4

0.706

CFP

0.695

ENSCAPP00000009463

0.695

RING1

0.695

ENSCAPP00000018370

0.695

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C6	ENSCAPP00000010667	ENSCAPP00000010456	ENSCAPP00000010667	Complement C6.	annotation not available	0.738
C6	PHC1	ENSCAPP00000010456	ENSCAPP00000002754	Complement C6.	Polyhomeotic homolog 1.	0.720
CBX4	ENSCAPP00000001276	ENSCAPP00000007761	ENSCAPP00000001276	Chromobox 4.	annotation not available	0.998
CBX4	ENSCAPP00000009463	ENSCAPP00000007761	ENSCAPP00000009463	Chromobox 4.	annotation not available	0.988
CBX4	ENSCAPP00000018370	ENSCAPP00000007761	ENSCAPP00000018370	Chromobox 4.	annotation not available	0.988
CBX4	PCGF2	ENSCAPP00000007761	ENSCAPP00000010556	Chromobox 4.	Polycomb group ring finger 2.	0.998
CBX4	PHC1	ENSCAPP00000007761	ENSCAPP00000002754	Chromobox 4.	Polyhomeotic homolog 1.	0.706
CBX4	RING1	ENSCAPP00000007761	ENSCAPP00000010939	Chromobox 4.	Ring finger protein 1.	0.998
CBX4	SCMH1	ENSCAPP00000007761	ENSCAPP00000007430	Chromobox 4.	Scm polycomb group protein homolog 1.	0.975
CFP	ENSCAPP00000010667	ENSCAPP00000008581	ENSCAPP00000010667	Complement factor properdin.	annotation not available	0.549
CFP	PHC1	ENSCAPP00000008581	ENSCAPP00000002754	Complement factor properdin.	Polyhomeotic homolog 1.	0.695
ENSCAPP00000001276	CBX4	ENSCAPP00000001276	ENSCAPP00000007761	annotation not available	Chromobox 4.	0.998
ENSCAPP00000001276	ENSCAPP00000009463	ENSCAPP00000001276	ENSCAPP00000009463	annotation not available	annotation not available	0.991
ENSCAPP00000001276	ENSCAPP00000018370	ENSCAPP00000001276	ENSCAPP00000018370	annotation not available	annotation not available	0.991
ENSCAPP00000001276	PCGF2	ENSCAPP00000001276	ENSCAPP00000010556	annotation not available	Polycomb group ring finger 2.	0.998
ENSCAPP00000001276	PHC1	ENSCAPP00000001276	ENSCAPP00000002754	annotation not available	Polyhomeotic homolog 1.	0.728
ENSCAPP00000001276	RING1	ENSCAPP00000001276	ENSCAPP00000010939	annotation not available	Ring finger protein 1.	0.998
ENSCAPP00000001276	SCMH1	ENSCAPP00000001276	ENSCAPP00000007430	annotation not available	Scm polycomb group protein homolog 1.	0.993
ENSCAPP00000009463	CBX4	ENSCAPP00000009463	ENSCAPP00000007761	annotation not available	Chromobox 4.	0.988
ENSCAPP00000009463	ENSCAPP00000001276	ENSCAPP00000009463	ENSCAPP00000001276	annotation not available	annotation not available	0.991