SLC5A12 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

SLC5A12

Solute carrier family 5 member 12. (569 aa)

Predicted Functional Partners:

ENSCAPP00000000509

0.750

CDC45

0.750

MCM6

0.750

ENSCAPP00000002903

0.750

MCM2

0.750

ENSCAPP00000009470

0.750

GINS1

0.750

ENSCAPP00000013166

0.750

GINS4

0.750

MCM3

0.750

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC45	ENSCAPP00000000509	ENSCAPP00000000963	ENSCAPP00000000509	Cell division cycle 45.	annotation not available	0.999
CDC45	ENSCAPP00000002903	ENSCAPP00000000963	ENSCAPP00000002903	Cell division cycle 45.	annotation not available	0.999
CDC45	ENSCAPP00000009470	ENSCAPP00000000963	ENSCAPP00000009470	Cell division cycle 45.	annotation not available	0.999
CDC45	ENSCAPP00000013166	ENSCAPP00000000963	ENSCAPP00000013166	Cell division cycle 45.	annotation not available	0.999
CDC45	GINS1	ENSCAPP00000000963	ENSCAPP00000010041	Cell division cycle 45.	GINS complex subunit 1.	0.998
CDC45	GINS4	ENSCAPP00000000963	ENSCAPP00000013320	Cell division cycle 45.	GINS complex subunit 4.	0.999
CDC45	MCM2	ENSCAPP00000000963	ENSCAPP00000003876	Cell division cycle 45.	Minichromosome maintenance complex component 2.	0.999
CDC45	MCM3	ENSCAPP00000000963	ENSCAPP00000013580	Cell division cycle 45.	Minichromosome maintenance complex component 3.	0.999
CDC45	MCM6	ENSCAPP00000000963	ENSCAPP00000000980	Cell division cycle 45.	Minichromosome maintenance complex component 6.	0.999
CDC45	SLC5A12	ENSCAPP00000000963	ENSCAPP00000002804	Cell division cycle 45.	Solute carrier family 5 member 12.	0.750
ENSCAPP00000000509	CDC45	ENSCAPP00000000509	ENSCAPP00000000963	annotation not available	Cell division cycle 45.	0.999
ENSCAPP00000000509	ENSCAPP00000002903	ENSCAPP00000000509	ENSCAPP00000002903	annotation not available	annotation not available	0.999
ENSCAPP00000000509	ENSCAPP00000009470	ENSCAPP00000000509	ENSCAPP00000009470	annotation not available	annotation not available	0.998
ENSCAPP00000000509	ENSCAPP00000013166	ENSCAPP00000000509	ENSCAPP00000013166	annotation not available	annotation not available	0.999
ENSCAPP00000000509	GINS1	ENSCAPP00000000509	ENSCAPP00000010041	annotation not available	GINS complex subunit 1.	0.999
ENSCAPP00000000509	GINS4	ENSCAPP00000000509	ENSCAPP00000013320	annotation not available	GINS complex subunit 4.	0.999
ENSCAPP00000000509	MCM2	ENSCAPP00000000509	ENSCAPP00000003876	annotation not available	Minichromosome maintenance complex component 2.	0.998
ENSCAPP00000000509	MCM3	ENSCAPP00000000509	ENSCAPP00000013580	annotation not available	Minichromosome maintenance complex component 3.	0.998
ENSCAPP00000000509	MCM6	ENSCAPP00000000509	ENSCAPP00000000980	annotation not available	Minichromosome maintenance complex component 6.	0.998
ENSCAPP00000000509	SLC5A12	ENSCAPP00000000509	ENSCAPP00000002804	annotation not available	Solute carrier family 5 member 12.	0.750