RNMT protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RNMT

RNA guanine-7 methyltransferase. (371 aa)

Predicted Functional Partners:

SUPT5H

0.991

RNGTT

0.989

ENSCAPP00000018237

0.969

ENSCAPP00000018284

0.959

ENSCAPP00000009156

0.949

ENSCAPP00000001157

0.936

POLR2B

0.893

EIF4E

0.875

CDK12

0.848

ENSCAPP00000018683

0.848

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK12	ENSCAPP00000001157	ENSCAPP00000000217	ENSCAPP00000001157	Cyclin dependent kinase 12.	annotation not available	0.954
CDK12	ENSCAPP00000018683	ENSCAPP00000000217	ENSCAPP00000018683	Cyclin dependent kinase 12.	annotation not available	0.754
CDK12	POLR2B	ENSCAPP00000000217	ENSCAPP00000013188	Cyclin dependent kinase 12.	RNA polymerase II subunit B.	0.627
CDK12	RNMT	ENSCAPP00000000217	ENSCAPP00000002833	Cyclin dependent kinase 12.	RNA guanine-7 methyltransferase.	0.848
CDK12	SUPT5H	ENSCAPP00000000217	ENSCAPP00000006127	Cyclin dependent kinase 12.	SPT5 homolog, DSIF elongation factor subunit.	0.954
EIF4E	RNMT	ENSCAPP00000004549	ENSCAPP00000002833	Eukaryotic translation initiation factor 4E.	RNA guanine-7 methyltransferase.	0.875
ENSCAPP00000001157	CDK12	ENSCAPP00000001157	ENSCAPP00000000217	annotation not available	Cyclin dependent kinase 12.	0.954
ENSCAPP00000001157	ENSCAPP00000018237	ENSCAPP00000001157	ENSCAPP00000018237	annotation not available	annotation not available	0.563
ENSCAPP00000001157	ENSCAPP00000018683	ENSCAPP00000001157	ENSCAPP00000018683	annotation not available	annotation not available	0.954
ENSCAPP00000001157	POLR2B	ENSCAPP00000001157	ENSCAPP00000013188	annotation not available	RNA polymerase II subunit B.	0.999
ENSCAPP00000001157	RNGTT	ENSCAPP00000001157	ENSCAPP00000011478	annotation not available	RNA guanylyltransferase and 5'-phosphatase.	0.972
ENSCAPP00000001157	RNMT	ENSCAPP00000001157	ENSCAPP00000002833	annotation not available	RNA guanine-7 methyltransferase.	0.936
ENSCAPP00000001157	SUPT5H	ENSCAPP00000001157	ENSCAPP00000006127	annotation not available	SPT5 homolog, DSIF elongation factor subunit.	0.995
ENSCAPP00000009156	ENSCAPP00000018284	ENSCAPP00000009156	ENSCAPP00000018284	annotation not available	annotation not available	0.999
ENSCAPP00000009156	RNMT	ENSCAPP00000009156	ENSCAPP00000002833	annotation not available	RNA guanine-7 methyltransferase.	0.949
ENSCAPP00000018237	ENSCAPP00000001157	ENSCAPP00000018237	ENSCAPP00000001157	annotation not available	annotation not available	0.563
ENSCAPP00000018237	POLR2B	ENSCAPP00000018237	ENSCAPP00000013188	annotation not available	RNA polymerase II subunit B.	0.755
ENSCAPP00000018237	RNMT	ENSCAPP00000018237	ENSCAPP00000002833	annotation not available	RNA guanine-7 methyltransferase.	0.969
ENSCAPP00000018237	SUPT5H	ENSCAPP00000018237	ENSCAPP00000006127	annotation not available	SPT5 homolog, DSIF elongation factor subunit.	0.665
ENSCAPP00000018284	ENSCAPP00000009156	ENSCAPP00000018284	ENSCAPP00000009156	annotation not available	annotation not available	0.999