STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRRC9Leucine rich repeat containing 9. (1149 aa)    
Predicted Functional Partners:
TEP1
Telomerase associated protein 1.
    
 0.718
PPP1R11
Protein phosphatase 1 regulatory inhibitor subunit 11.
   
 0.717
DNALI1
Dynein axonemal light intermediate chain 1.
    
 0.710
WDR90
WD repeat domain 90.
    
  0.678
TONSL
Tonsoku like, DNA repair protein.
    
 0.650
ENSCAPP00000001922
annotation not available
      
 0.636
SAMD12
Sterile alpha motif domain containing 12.
      
 0.614
TULP4
TUB like protein 4.
     
 0.581
ENSCAPP00000000802
annotation not available
    
 0.552
PPP1CA
Protein phosphatase 1 catalytic subunit alpha.
    
 0.552
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.