Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF144BRing finger protein 144B. (293 aa)    
Predicted Functional Partners:
UBE2L6
Ubiquitin conjugating enzyme E2 L6.
    
 0.780
TMEM150A
Transmembrane protein 150A.
      
 0.761
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.696
ENSCAPP00000010366
annotation not available
    
  0.696
ENSCAPP00000002641
annotation not available
      
 0.684
RBM43
RNA binding motif protein 43.
      
 0.675
BIRC6
Baculoviral IAP repeat containing 6.
    
 0.612
RNF130
Ring finger protein 130.
     
 0.583
UEVLD
UEV and lactate/malate dehyrogenase domains.
    
  0.580
IRF9
Interferon regulatory factor 9.
    
 0.579
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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