Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UPF1UPF1 RNA helicase and ATPase. (1102 aa)    
Predicted Functional Partners:
EIF4A3
Eukaryotic translation initiation factor 4A3.
    
 0.999
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.999
ENSCAPP00000010813
annotation not available
    
 0.999
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 0.999
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.999
CASC3
CASC3 exon junction complex subunit.
    
 0.998
RBM8A
RNA binding motif protein 8A.
    
 0.998
RNPS1
RNA binding protein with serine rich domain 1.
    
 0.995
ENSCAPP00000014327
annotation not available
   
 0.995
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.992
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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