Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000002862annotation not available (912 aa)    
Predicted Functional Partners:
TRPM5
Transient receptor potential cation channel subfamily M member 5.
      
 0.764
TRPC6
Transient receptor potential cation channel subfamily C member 6.
    
 
 0.700
GNG13
G protein subunit gamma 13.
    
 0.622
WDR90
WD repeat domain 90.
    
   0.608
RHO
Rhodopsin.
     
 0.604
ENSCAPP00000014622
annotation not available
    
 0.583
ENSCAPP00000011373
annotation not available
    
 0.580
GNB5
G protein subunit beta 5.
    
  0.568
GNAI1
G protein subunit alpha i1.
    
 0.568
GNB1
G protein subunit beta 1.
    
  0.568
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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