Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NRP1Neuropilin 1. (866 aa)    
Predicted Functional Partners:
SEMA3A
Semaphorin 3A.
    
 0.999
PLXNA4
Plexin A4.
    
 0.997
SEMA3B
Semaphorin 3B.
    
 0.997
PLXNA2
Plexin A2.
    
 0.996
KDR
Kinase insert domain receptor.
    
 0.993
PLXNA1
Plexin A1.
    
 0.991
L1CAM
L1 cell adhesion molecule.
    
 0.989
PLXNA3
Plexin A3.
    
 0.989
SEMA3F
Semaphorin 3F.
    
 0.976
SEMA3C
Semaphorin 3C.
    
 0.971
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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