Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBI1ORC ubiquitin ligase 1. (616 aa)    
Predicted Functional Partners:
ENSCAPP00000007441
annotation not available
    
 
 0.964
WRAP73
WD repeat containing, antisense to TP73.
    
   0.918
CNOT3
CCR4-NOT transcription complex subunit 3.
    
   0.881
RC3H1
Ring finger and CCCH-type domains 1.
    
 
 0.867
CNOT7
CCR4-NOT transcription complex subunit 7.
    
 
 0.843
ENSCAPP00000005548
annotation not available
    
 
 0.836
ENSCAPP00000012294
annotation not available
    
 
 0.836
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.828
CDK1
Cyclin dependent kinase 1.
     
  0.823
CCNA1
Cyclin A1.
     
  0.823
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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