ZMAT2 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ZMAT2

Zinc finger matrin-type 2. (167 aa)

Predicted Functional Partners:

SART1

0.997

LSM7

0.996

MFAP1

0.996

LSM8

0.995

PRPF31

0.995

EFTUD2

0.995

PRPF6

0.995

SNRNP200

0.995

PRPF3

0.995

LSM5

0.994

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTUD2	LSM5	ENSCAPP00000014264	ENSCAPP00000004435	Elongation factor Tu GTP binding domain containing 2.	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.994
EFTUD2	LSM7	ENSCAPP00000014264	ENSCAPP00000014057	Elongation factor Tu GTP binding domain containing 2.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.994
EFTUD2	LSM8	ENSCAPP00000014264	ENSCAPP00000006055	Elongation factor Tu GTP binding domain containing 2.	LSM8 homolog, U6 small nuclear RNA associated.	0.995
EFTUD2	MFAP1	ENSCAPP00000014264	ENSCAPP00000014896	Elongation factor Tu GTP binding domain containing 2.	Microfibril associated protein 1.	0.994
EFTUD2	PRPF3	ENSCAPP00000014264	ENSCAPP00000018408	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 3.	0.997
EFTUD2	PRPF31	ENSCAPP00000014264	ENSCAPP00000013115	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 31.	0.998
EFTUD2	PRPF6	ENSCAPP00000014264	ENSCAPP00000014812	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 6.	0.999
EFTUD2	SART1	ENSCAPP00000014264	ENSCAPP00000016508	Elongation factor Tu GTP binding domain containing 2.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.998
EFTUD2	SNRNP200	ENSCAPP00000014264	ENSCAPP00000017658	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein U5 subunit 200.	0.999
EFTUD2	ZMAT2	ENSCAPP00000014264	ENSCAPP00000002916	Elongation factor Tu GTP binding domain containing 2.	Zinc finger matrin-type 2.	0.995
LSM5	EFTUD2	ENSCAPP00000004435	ENSCAPP00000014264	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	Elongation factor Tu GTP binding domain containing 2.	0.994
LSM5	LSM7	ENSCAPP00000004435	ENSCAPP00000014057	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LSM5	LSM8	ENSCAPP00000004435	ENSCAPP00000006055	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM8 homolog, U6 small nuclear RNA associated.	0.999
LSM5	MFAP1	ENSCAPP00000004435	ENSCAPP00000014896	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	Microfibril associated protein 1.	0.979
LSM5	PRPF3	ENSCAPP00000004435	ENSCAPP00000018408	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 3.	0.998
LSM5	PRPF31	ENSCAPP00000004435	ENSCAPP00000013115	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 31.	0.993
LSM5	PRPF6	ENSCAPP00000004435	ENSCAPP00000014812	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 6.	0.994
LSM5	SART1	ENSCAPP00000004435	ENSCAPP00000016508	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.995
LSM5	SNRNP200	ENSCAPP00000004435	ENSCAPP00000017658	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein U5 subunit 200.	0.990
LSM5	ZMAT2	ENSCAPP00000004435	ENSCAPP00000002916	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	Zinc finger matrin-type 2.	0.994